WebSnapHiC2 can iden- tify 5 Kb resolution chromatin loops with high sensitivity and accuracy and help to suggest target genes for GWAS variants in a cell-type-specific manner. … Web10 Jan 2024 · The research article “SnapHiC: a computational pipeline to identify chromatin loops from single cell Hi-C data” I co-authored is accepted for publication in Nature Methods. June 15, 2024 The research article “Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data” I co-authored is accepted for …
(PDF) SnapHiC: a computational pipeline to identify chromatin …
WebThe Github plugin decorates Jenkins "Changes" pages to create links to your Github commit and issue pages. It adds a sidebar link that links back to the Github project page. When creating a job, specify that is connects to git. Under "Github project", put in: [email protected]: Person / Project .git Under "Source Code Management" select Git, and ... Web10 Oct 2024 · SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data. bioRxiv. Domain calling Shin, H., Shi, Y., Dai, C., Tjong, H., Gong, K., Alber, F., & Zhou, X. J. (2016). TopDom: an efficient and deterministic method for identifying topological domains in genomes. Nucleic acids research, 44 (7), e70-e70. snm3C-seq data css file header
SnapHiC: a computational pipeline to map chromatin …
WebHere, we describe Single-Nucleus Analysis Pipeline for Hi-C (SnapHiC), a method that can identify chromatin loops at high res... Cite Download full-text Similar publications Brand new norms for a... Web2 Mar 2024 · To evaluate the performance of SnapHiC-G in human brain cortical cells, we tested SnapHiC, FitHiC2, FastHiC, HiC-ACT, and HiC-DC+ along with SnapHiC-G on three cell types (oligodendrocytes, microglia, and L2/3 neurons) from 2,869 human brain cortical cells, each with more than 150,000 contacts, from the Lee et al. WebIn sum, SnapHiC-G is a powerful tool for characterizing cell-type-specific enhancer-promoter interactions from complex tissues and can facilitate the discovery of chromatin interactions important ... css file for login form