Chip sequencing databases
WebOct 24, 2016 · The accumulation of a large number of ChIP-seq datasets worldwide has led to the establishment of dedicated databases. There are currently several freely available databases indexing mainly ChIP-seq data (Table 1) oriented to TF binding motifs/sites. Only some of them contain data processed uniformly by their own workflows starting … http://rna.sysu.edu.cn/chipbase/
Chip sequencing databases
Did you know?
WebAbstract Chromatin immunoprecipitation coupled with ultra-high-throug put parallel DNA sequencing (ChIP-seq) is an effective technology for the investigation of genome-wide … WebChIP-seq experiment information and raw data were collected from publically available sources. Sequenced reads were aligned using Bowtie2 and ChIP-seq peaks were called …
WebThe accumulated data of chromatin immunoprecipitation sequencing (ChIP-seq) provide great opportunities to discover the TF-target regulations across different conditions. In this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7190 ChIP-seq samples of 659 TFs and high-confidence binding sites ... WebChIPBase: A database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Yang JH, Li JH, Jiang S, Zhou H and Qu …
WebChIP-Seq Transcription Factor Motifs A vast majority of motifs in the HOMER motif database are based on the analysis of published ChIP-Seq data. Only high-quality ChIP … WebGenome-wide association studies have identified over 150 risk loci that increase prostate cancer risk. However, few causal variants and their regulatory mechanisms have been characterized. In this study, we utilized our previously developed single-nucleotide polymorphisms sequencing (SNPs-seq) technology to test allele-dependent protein …
WebMar 1, 2024 · 1. Introduction. Chromatin immunoprecipitation followed by sequencing (ChIP-seq) analysis is a ...
WebChIP-sequencing, also known as ChIP-seq, is a method used to analyze protein interactions with DNA. ... Massively parallel sequence analyses are used in conjunction with whole-genome sequence databases to analyze … green valley naturals pure vitalityWebChIP-Atlas: Peak Browser Visualizes protein binding on given genomic loci with IGV genome browser Tutorial movies H.sapiens (hg38) H. sapiens (hg19) M. musculus … green valley national school shiroorhttp://rna.sysu.edu.cn/chipbase/ green valley natural solutions phone numberWebJan 14, 2024 · The ChIP-seq peaks and the protein-binding DNA motifs under them can be further analyzed, and the resulted data can be integrated into a higher level database, … fnf mod corrupted stevenWebChIPBase v3.0 identified ~151,187,000 regulatory relationships between ~171,600 genes and ~3,000 regulators by analyzing ~55,000 ChIP-seq datasets, which represent a 30-fold expansion. Moreover, we de novo identified ~29,000 motif matrices of transcription factors. In addition, we constructed a novel “Enhancer” module to predict ~1,837,200 regulation … fnf mod corruptedhttp://cistrome.org/db/ fnf mod corrupted finWebSep 11, 2024 · In this regard, the EAT-UpTF analysis could be expanded to any plant species for which DAP-seq, ChIP-seq, or other appropriate sequencing data are available. In the future, a large-scale database integrating DAP-seq and ChIP-seq results would aid the identification of bona fide upstream TFs for groups of GOIs. EAT-UpTF is an open … green valley neighborhood association